.. Spatialproteomics documentation master file, created by
   sphinx-quickstart on Tue Aug 16 14:14:34 2022.
   You can adapt this file completely to your liking, but it should at least
   contain the root `toctree` directive.

Spatialproteomics - a unified framework for analyzing highly multiplexed fluorescence images
============================================================================================


.. toctree::
   :maxdepth: 1
   :caption: Contents:

   preprocessing
   label
   neighborhood
   plot
   tool
   image_container

.. toctree::
   :maxdepth: 1
   :caption: Tutorials:
   
   notebooks/ExampleWorkflow
   notebooks/Slicing
   notebooks/Segmentation
   notebooks/ArtifactRemoval
   notebooks/Plotting
   notebooks/ImageProcessing
   notebooks/CellTypePrediction
   notebooks/Neighborhoods
   notebooks/Interoperability
   notebooks/Interactivity
   notebooks/FAQ


Indices and tables
==================

* :ref:`genindex`
* :ref:`modindex`
* :ref:`search`